8. BioCRNpyler Tutorials

The following Jupyter notebooks provide a set of tutorial introductions to BioCRNpyler functionality.

Note

The tutorials here should probably eventually become independent chapters in the User Guide.

• 8.1. Building Chemical Reaction Networks (CRNs) Directly with BioCRNpyler
• 8.2. Compiling Chemical Reaction Networks
• 8.3. DNA Assemblies, gene expression, transcription, and translation
• 8.4. Building Gene Regulatory Networks with BioCRNpyler
• 8.5. Global Mechanisms
• 8.6. Plotting Installation:
• 8.7. Developer Overview
• 8.8. DNA_construct Examples