2. BioCRNpyler Tutorials

The following Jupyter notebooks provide a set of tutorial introductions to BioCRNpyler functionality.

Note

The tutorials here should probably eventually become independent chapters in the User Guide.

• 2.1. Building Chemical Reaction Networks (CRNs) Directly with BioCRNpyler
• 2.2. Compiling Chemical Reaction Networks
• 2.3. DNA Assemblies, gene expression, transcription, and translation
• 2.4. Building Gene Regulatory Networks with BioCRNpyler
• 2.5. Parameters in BioCRNpyler
• 2.6. Global Mechanisms
• 2.7. Network Plotting Examples
• 2.8. Developer Overview
• 2.9. DNA_construct Examples